Study Genetic Distances Amonge Nine Okra, (Abelmoschus, esculentus) genotypes UsingTen ISSR markers

Authors

  • Melath Kadhum Farhood AL- Ghufaili Faculty of Science , University of Kufa, Iraq
  • Attyaf Jameel Thamir Al-Tamimi Faculty of Science, University of Kufa, Iraq

DOI:

https://doi.org/10.36320/ajb/v12.i3.11787

Keywords:

Okra, ISSR markers, Genetic diversity, Dendrogram

Abstract

Ten from molecular marker ISSRs, (Inter, - Simple, Sequence, Repeats.) were used to find genetic, diversity, genetic* relationship, and DNA* fingerprint* of nine Okra (Abelmoschus esculentus) genotypes. Primers varied among them in giving unique DNA fingerprints, primers (UBC-809, HB12, and HBS10) gave a unique fingerprint for one genotype of okra, while primers (844A, UBC808) give unique fingerprint for four genotypes. High genetic distance was (0.722) between  Egypt and Hasnawia while low genetic distance was (0.074) between Hasnawia and Lahluba. Cluster analysis (Phylogenetic tree) grouped studied genotypes in to two main cluster, the first large one included six genotype(Mosulia , Houseagrl, Khnisiraa ,Hasnawia ,Lahluba and Batra) and other small one includes three genotype (Soutl,Egypt and Zasco seed).ISSR marker could reveal genetic relationship in studied genotypes according to their origin, thus it gave an excellent tool to breeding programs help breeders .

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References

Abou-Deif, M. H.; Rashed, M. A.; Sallam, M. A. A.; Mostafa, E. A. H. and Ramadan,W.A.(2013).Characterization of Twenty Wheat Varieties by ISSR Markers. Middle-East Journal of Scientific Research 15 (2): 168-175.

Akkaya, M.S.; Bhagwat, A.A. and Cregan, P.B. (1992). Length polymorphisms of simple sequence repeat DNA in soybean. Genetics, 132: 1131–9. DOI: https://doi.org/10.1093/genetics/132.4.1131

Al–Badeiry, Nidhal Abdul Hussein Massan 2013. Molecular and Cytological Studies on Some Zea mays Varieties in Iraq.Ph.D. thesis, University of Kufa, Faculty of Science, Department of Biology, Iraq.

Al-Judy, N.J. (2004).Detecting of DNA Fingerprints and Genetic Relationship Analysis in Local and Improved Rice (Oryza sativa L.)Varieties in Iraq Using RAPD Markers.Ph.D thesis, College of Science, Baghdad University, pp 166.

AL-Tamimi, Attyaf, Jameel. Thamir 2014 . Genetic Diversity of Some Tomato Genotypes Using RAPD and SSR markers in Iraq.Ph.D. thesis.Faculty of science.The University of Kufa. p 183.

Arif, I. A.; Bakir, M. A.; Khan, H. A.; Al-Farhan, A. H.; Al-Homaidan, A. A.; Bahkali, A. H.; AlSadoon, M. and Shobrak, M. (2010).Application of RAPD for molecular characterization of plant species of medicinal value from an arid environment.Genet. Mol. Res., 9 (4): 2191-2198. DOI: https://doi.org/10.4238/vol9-4gmr848

Belaj, A.; Trujillo, R. and Rallo, L. (2001). Polymorphism and discrimination capacity of randomly amplified polymorphic markers in an Olive germplasm bank. J. Amer. Soc. Hort. Sci., 126 (1): 64-71. DOI: https://doi.org/10.21273/JASHS.126.1.64

Bertoni B.W., M.P. de C Telles, M.G. Malosso, S.C. Torres, J.O. Pereira, M.V. Lourenço, S. de C França, A.M. Pereira. 2010. Genetic diversity in natural populations of Jacaranda decurrens Cham determined using RAPD and AFLP markers. Genet Mol. Biol. 33(3): 532–538. DOI: https://doi.org/10.1590/S1415-47572010005000068

Bello, H.S.; Mustapha, A.; Isa, M.A., and Rahila, T.C. (2015). The in vitro antibacterial activity of okra (Abelmoschus esculentus) against some selected bacteria from Maiduguri, North-Eastern Nigeria. Int J Biosci Nanosci, 2(4):84-88.

Carvalho, Y.G.S.; Vitorino, L.C.; de Souza, U.J. B., and Bessa, L.A. (2019).Recent Trends in Research on the Genetic Diversity of Plants: Implications for Conservation. Diversity, 11- 62. DOI: https://doi.org/10.3390/d11040062

Fadoul, H. E.; El Siddig, M. A.; and El Hussein, A. A. (2013).Assessment of genetic diversity among Sudanese wheat cultivars using RAPD markers. INT J CURR SCI. 6: E 51-57.

Fufa, N. (2019). Propagation Methods of Okra (Abelmoschus esculentus L.) and its Application Used in Vitro Plant Regeneration. Acta Scientific Agriculture, 3 (10):125-130. DOI: https://doi.org/10.31080/ASAG.2019.03.0659

Ghariani, S.; Trifi-Farah, N.; Chakroun, M.; Marghalin, S. and Arrakchi, M. (2003). Genetic diversity in Tunisian perennial ryegrass revealed by ISSR markers. Genetic Gen Resour Crop Evol 50: 809-815.

Graham, J. and McNicol, R. J. (1995). An examination of the ability of RAPD markers to determine the relationships within and between Rubus spp. Theo. Appl. Gene., 90: 1128-1132. DOI: https://doi.org/10.1007/BF00222932

Ghariani, S.; Trifi-Farah, N.; Chakroun, M.; Marghalin, S. and Marrakchi, M. (2003). Genetic diversity in Tunisian perennial ryegrass revealed by ISSR markers. Genetic Gen Resour Crop Evol 50: 809-815. DOI: https://doi.org/10.1023/A:1025971730574

Grewal, A.; Kharb, P.; Malik, R.; Jain, S.and. Jain, R. K. (2007).Assessment of genetic diversity among some Indian wheat cultivars using random amplified polymorphic DNA (RAPD) markers .indian Journal of Biotechnology, 6, pp 18-23.

Huang, J.; Liu1, S.; Guo, X.; Zhao, Y.; Li, M.; Zhang, C.; Zhu, J. and Ye, J. (2017). Genetic Diversity and Evolutionary Analysis of Okra (Abelmoschus esculentus (L.) Moench) Germplasm Resources based on ISSR Markers Genetics and Molecular Biology Research. 1 (1):2.

Huang, J.C.and Sun. M. (2000). Genetic diversity and relationships of sweet potato and its wild relatives in Jpomoea series Batatas (Convolvulaceae) as revealed by ISSR and restriction analysis of chloroplast DNA.Theor Appl Genet 100: 1050-1060. DOI: https://doi.org/10.1007/s001220051386

Hunter, P. R. and Gaston, M. A. (1988). Numerical index of the discriminatory ability of Simpson's index of diversity. J. Clin. Mic., 26:2465-2466. DOI: https://doi.org/10.1128/jcm.26.11.2465-2466.1988

Islam, M.T. (2019). Phytochemical information and pharmacological activities of Okra (Abelmoschus esculentus): A literature-based review. Phytotherapy Research, 33(1(:72-80. DOI: https://doi.org/10.1002/ptr.6212

Lateef, D.D. (2015). DNA marker technologies in plants and applications for crop improvements. Journal of Biosciences and Medicines, 3(05) p.7. DOI: https://doi.org/10.4236/jbm.2015.35002

Mahpara, S. Farooq, J. Ali, Z.; Petrescu-Mag, I. V.andHussain, F. (2012).Assessment of genetic distance among wheat genotypes through RAPD markers.Advances in Agriculture &Botanics International Journal of the Bioflux Society. Volume 4 (1):31-35.

Messmer, M.M.; Melchinger,A.E.; Boppenmaier,J.; Herrmann,R.G. and Brunklaus-Jung,E. (1992). RFLP analysis of early-maturing Eurpeonmaizgermplsm.Theor.Appl.Genet. 83: 1003-1112. DOI: https://doi.org/10.1007/BF00232964

Muhammad, R.W.; Qayyum, A.; Ahmad1, M.Q.; Hamza, A.; Yousaf, M.; Ahmad, B.; Younas, M.; Malik, W.; Liaqat, S. and Noor, E. (2017). Characterization of maize genotypes for genetic diversity based on inter simple sequence repeats. Genetics and Molecular Research 16 (1). DOI: https://doi.org/10.4238/gmr16019438

Newton, C. R. and Graham, A. (1997).Polymerase Chain Reaction.2nd ed. Bios.Scientific Publishers Ltd., Oxford, U.K.

Pal, D. and Singh, M. (2013).Molecular Profiling and RAPD analysis of Commercial Hybrid Parental Lines in Tomato and Chili. IJIRSET, 2(9): 4288- 4292.

Powell, W.; Morgante, M.; Andre C.; Hanafey, M.; Vogel, J.; Tingey, S. and Rafalski, A. (1996).The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2: 225-238. DOI: https://doi.org/10.1007/BF00564200

Pujor, S.; Tamhankar, S.A.; Rao, V.S.; Gupta, V.S.; Naik, S. and Ranjekar, P.K. (1999). Arbitrarily primed-PCR based diversity assessment reflects hierarchical groupings of Indian tetraploid wheat genotypes. Theor. Appl. Genet., 99: 868-876. DOI: https://doi.org/10.1007/s001220051307

Russell, J.R.; Fuller, J.D.; Macaulay, M.; Hatz, B.; Jahoor, A.; Powell, W. and Waugh, R. (1997).Direct comparison of levels of genetic variation among barley accessions detected by RFLP, AFLPs, SSRs and RAPDs.Theor. Appl. Genet. 95: 714-722. DOI: https://doi.org/10.1007/s001220050617

Sofalian, O.; Chaparzadeh, N. and Dolati, M.(2008). Genetic diversity in spring wheat landraces from northwest of Iran assessed by ISSR markers. Notul. Bot. Hort. Agric., Cluj-Napoca, 37: 252-256.

Tahir, N. A. (2014).Genetic Variability Evaluation Among Iraqi Rice (Oryza sativa L) Varieties using RAPD Markers and Protein Profiling. Jordan Journal of Biological Sciences, 7(1): 13 – 18. DOI: https://doi.org/10.12816/0008207

Vishwanath, K.; Prasanna, K. P. R., Pallavi, H. M.; Rajendra P.; Ramegowda, S. and Devaraju, P. J. (2010). Identification of Tomato (Lycopersiconesculentum) Varieties through Total Soluble Seed Proteins Research Journal of Agricultural Sciences, 2(1): 08-12.

Williams, J. G.; Kubelik, A. R.; Livak, K. J.; Rafaski, J. A. and Tingey, S.V. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res., 18 (22):6531-6535. DOI: https://doi.org/10.1093/nar/18.22.6531

Wu, Y.T.; Zhang, T.Z. and Yin, J.M. (2001). Genetic diversity of upland Cotton accessions detected by a molecular marker and morphological traits. J Genet Genomics 28:1040-1050.

Yuan C.Y.; Wang P.; Chen P.; Xiao W. J.; Zhang1 C.; Hu S.; Zhou P.; Chang H.P.; He Z.; Hu R.; Lu X. T.; Ye J.Z. and Guo X. H. (2015). Genetic diversity revealed by morphological traits and ISSR markers in 48 Okras (Abelmoschus escullentus L.) Physiol Mol Biol Plants. 21(3):359–364 DOI: https://doi.org/10.1007/s12298-015-0303-5

Zietkiewicz, E.; Rafalski, A. and Labuda, D. (1994).Genome fingerprinting by Simple Sequence Repeat

(SSR) - anchored polymerase chain reaction amplification. Genomics 20: 176-183. DOI: https://doi.org/10.1006/geno.1994.1151

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Published

2020-12-29

How to Cite

AL- Ghufaili, M., & Al-Tamimi , A. (2020). Study Genetic Distances Amonge Nine Okra, (Abelmoschus, esculentus) genotypes UsingTen ISSR markers. Al-Kufa University Journal for Biology, 12(3), 1–10. https://doi.org/10.36320/ajb/v12.i3.11787

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